Software Standalone applications Cel File Explorer

Cel File Explorer

This simple application allows extracting raw expression intensities out of multiple Affymetrix CEL files based on a given list of probe coordinates or probeset IDs. The application supports CEL files in various formats and both official and custom CDF files for probeset based expression intensity extraction.

There are two methods of probe intensity extraction:

• Single probes – this option allows to extract intensities of single probes based on a list of x and y coordinates (separated with a space or tab) e.g.: "100 120"
• Entire probesets – this option extracts intensities of all probes (both Perfect Match and Miss Match if available) assigned to a specific set. Instead of a list of probe coordinates the input must ontain a list of probeset IDs to be extracted, e.g.: "121_at". Additionally this option requires a CDF file to be loaded into the application which defines the probe-to-probeset assignment. 

Available application versions: